PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020451-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 242aa    MW: 26027.1 Da    PI: 7.3965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020451-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001986108123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+k Fs+   L  H  +H
  NNU_020451-RA  86 YRCTVCNKAFSSYQALGGHKASH 108
                    9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-1386110IPR007087Zinc finger, C2H2
SMARTSM003550.008586108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.20186108IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-986108No hitNo description
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-9136163No hitNo description
PfamPF139128.4E-14141165IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411141163IPR007087Zinc finger, C2H2
SMARTSM003550.19141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALEALNSPR TAAPSLHYDD MDLHCLEPWA KRKRSKRPRL ENPPTEEEYL ALCLIMLARG  60
GATSGDAHHN HSPSPPPPPP ALKLNYRCTV CNKAFSSYQA LGGHKASHRK LSGNDDQSTS  120
STTTTTTSTV NHTVNPGGKI HECSICHKSF PTGQALGGHK RCHYDGGNTN ITATLSSDGA  180
ASSHSLRDFD LNMPALPESL PGFGVAAGGK SEIHVDEEVD SPLPMKKPRL LIPAEDTSYS  240
RD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277065.11e-180PREDICTED: zinc finger protein ZAT10
SwissprotQ962896e-61ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA5BBP64e-97A5BBP6_VITVI; Putative uncharacterized protein
TrEMBLF6H6632e-97F6H663_VITVI; Putative uncharacterized protein
STRINGVIT_03s0091g00690.t017e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-55salt tolerance zinc finger